After Bebop and Rocksteady blow another assignment, Shredder fires them and decides to replace them with an intelligent Foot Soldier named Alpha One. A computer interruption caused by Bebop and Rocksteady causes the main computer to malfunction while Krang is programming Alpha One. The end result is Alpha One comes out more intelligent than Krang and Shredder put together. Alpha One decides he does not want to work for Krang and Shredder, so he sends them out into Dimension X space in a life pod. Alpha One starts to do the same with Bebop and Rocksteady but they tell him where he can find a wave modulator. Thinking that this will be helpful if he wants to rule the world, A 1 decides to keep Bebop and Rocksteady with him. His plan is to transport all the humans to Dimension X so he and his robots will have control of the Earth.
The Turtles are looking for the wave modulator in the sewer. Just as they find it, Alpha One shows up with his soldiers, Bebop and Rocksteady. The Turtles try to